KFL&A Public Health is funded by the Province of Ontario's Ministry of Health and Long-term Care, the City of Kingston, Frontenac County, and Lennox & Addington County, as defined in the Health Protection and Promotion Act.
A number of programs administered by KFL&A Public Health received 100 percent funding from the provincial government. While municipalities do not contribute to the funding of these programs, they are designed and administered to meet the local needs of residents wherever they live: Kingston, Napanee, Cloyne, Denbigh, and all parts in between.
The KFL&A Board of Health appoints an auditor who is licensed under the Public Accountancy Act. Every year, the auditor is required to express an opinion whether the financial statements of KFL&A Public Health present fairly, in all material respects the Board of Health's financial position, the results of operations, and cash flow in accordance with Canadian generally accepted accounting principles as recommended by the Public Sector Accounting Board of the CICA.